Researchers and Clinicians united

to restore vision.

Single Cell Genomics Platform

Head: Simone Picelli

Single cell technologies enable the analysis of thousands of single cells in just one experiment, generating an unprecedented amount of data. The field is rapidly expanding, with new methods and algorithms for data analysis being published almost every week.

IOB has a state-of-the-art Single Cell Genomics Facility that provides clinicians and basic researchers with guidance, support and advice for implementing single cell sequencing technologies in their current and future projects. Our platform also develops new single cell methods to improve data quality, increase throughput and reduce costs. 

The Single Cell Genomics Facility offers the latest technologies in the Genomics field and has made significant contributions to understanding fundamental molecular mechanisms in healthy and diseased individuals.

To explore collaboration opportunities or to learn more about our platform services, please reach out to us at: single_cell_service@iob.ch

Single Cell and Nuclei Dissociation

Qiagen RNA extraction Kits

Miltenyi Biosciences Tissue Dissociation Kits

Salty-EZ-based protocols (Adapted from Martelotto, LG 2021)

Technologies

10x Genomics Single Cell Gene Expression 3’ and 5’ (with Feature Barcoding and Sample Multiplexing)

10x Genomics Single Cell Multiome

FLASH-seq (plate format only)

G&T-seq (plate format only)

PATCH-seq

Bulk FLASH-seq

Curio Biosciences Seeker (Spatial Transcriptomics)

Technology overview

Quality Control

DNA/RNA Quantification with Qubit or Nanodrop

DNA/RNA size and quality assessment with Bioanalyzer

Plate quantification with Hidex Plate Reader

Equipment

10x Chromium Controller and 10x Chromium X

BD Rhapsody Single-Cell Analysis System

Illumina NextSeq550

Oxford Nanopore P2 Solo

Oxford Nanopore Minion

TECAN Fluent 780

I.DOT Nanodispenser

Qubit v4 Fluorometer

Agilent 2100 Bioanalyzer

MoxiGo 532

LunaFX

Atrandi Biosciences Onyx
 

Group Members

Simone Picelli - Head of Platform

Mariana Ribeiro - Research Associate 

Sara Crausaz - Research Assistant 

 

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